Project 2.2.0.1 not detecting my controller

[JMVR]

So, Project64 2.2.0.1 is not detecting my controller. I wanted to take a previous version of PJ64 that I have (1.6), save the config, and load that config for PJ64 2.2.0.1. It didn't work, because 1.6 saved it as a .JSF file, while 2.2.0.1 loads it as a .CPF file. I am using a PS3 controller (with SCPToolkit, making it seem like an Xbox 360 controller), and my OS is Windows 7 64-bit. Help?